High-Protein Pizza Pasta Bake

Featured in: Weekend Warm Bakes

This high-protein dish combines tender pasta with lean ground beef and pepperoni, enveloped in a creamy yogurt and cheese sauce with aromatic herbs. The mixture is baked until bubbling and golden, creating a hearty, comforting meal rich in flavor and protein. Optional vegetables add texture and nutrients, making it a perfect satisfying main course with easy preparation and balanced nutrition.

Updated on Mon, 09 Feb 2026 15:49:00 GMT
High-protein pizza pasta bake with lean ground beef, pepperoni, and creamy yogurt-cheese sauce, baked until bubbly and golden.  Save to Pinterest
High-protein pizza pasta bake with lean ground beef, pepperoni, and creamy yogurt-cheese sauce, baked until bubbly and golden. | citrushearth.com

My workout buddy texted me at lunch one Tuesday asking if I had anything protein-packed for dinner, and honestly, I'd been tired of the same grilled chicken routine myself. That evening, I raided my fridge and found Greek yogurt, ground beef, pepperoni, and pasta, and thought: what if I stopped fighting my craving for comfort food and just made it healthier? Two hours later, we were scraping the baking dish clean, and she demanded the recipe before leaving. This High-Protein Pizza Pasta Bake became my answer to the impossible question of how to eat like you're indulging while actually fueling your body.

I made this for my sister after she mentioned struggling with meal prep, and watching her face when she tasted it was priceless. She'd been convinced that eating for performance meant sacrificing flavor, and this dish completely changed that assumption for her in one bite. Now it's her go-to when she's cooking for herself and her partner, and she's sent me photos from her kitchen three times already. Food really does hit different when it proves a limiting belief wrong.

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Ingredients

  • High-protein penne or rotini pasta (12 oz): The shape matters more than you'd think because it catches and holds onto that creamy yogurt sauce beautifully, unlike long thin noodles that just slip right through.
  • Lean ground beef (8 oz): Grass-fed if your budget allows, because the flavor is noticeably richer and you'll use less seasoning overall.
  • Turkey or regular pepperoni, sliced (2 oz): This gives you that pizza flavor identity without needing heavy cream or excessive cheese.
  • Plain Greek yogurt (1 cup): The 2% version is your sweet spot between creaminess and tang, and it stabilizes beautifully in the oven without breaking or getting grainy.
  • Part-skim mozzarella (1.5 cups total): Part-skim still melts beautifully and browns on top, but saves you about 80 calories and 6 grams of fat compared to whole milk versions.
  • Onion, garlic, and optional bell pepper with mushrooms: These aromatics are what make your kitchen smell like an Italian restaurant and turn this from simple to special.
  • Marinara sauce (2 cups low-sodium): Low-sodium means you control the salt level and the sauce flavor isn't competing with your herbs and cheese.
  • Dried oregano and basil (½ tsp each): Don't skip these because they're what makes this taste intentional rather than just thrown together, even though it basically is.

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Instructions

Set up and preheat:
Get your oven going to 375°F and grease that 9x13-inch baking dish while you're thinking about it, because you won't want to stop mid-cooking to do this later.
Cook your pasta al dente:
Boil your pasta in salted water until it's just barely tender, then drain it completely and set it aside. The pasta will keep cooking in the oven, so undercooking it now prevents mushy bites later.
Brown the beef and build flavor:
Heat your skillet over medium, crumble in the ground beef, and let it sit for a minute before stirring so it actually browns instead of steams. Once it's cooked through, add your chopped onion and let it soften for a few minutes, then add the garlic, bell pepper, and mushrooms if you're using them, and give it another three minutes so everything gets to know each other.
Add your sauce and season:
Pour in the marinara sauce, sprinkle in your oregano and basil and red pepper flakes, then let everything simmer quietly for five minutes while the kitchen smells incredible. Taste it and add salt and pepper until it tastes like pizza sauce, not just tomato sauce.
Make your creamy base:
In a separate bowl, whisk together the Greek yogurt, one cup of mozzarella, and the Parmesan cheese until it's smooth and combined. This is your secret weapon for creaminess without the calories.
Combine everything:
In your largest bowl, toss together the cooked pasta, your beef and sauce mixture, the sliced pepperoni, and that yogurt-cheese mixture, making sure every piece of pasta gets coated. It should look creamy and substantial, not dry.
Transfer and top:
Pour everything into your prepared baking dish, then scatter that extra half cup of mozzarella and those pepperoni slices across the top. This is where the magic happens visually.
Bake until bubbly:
Slide it into the oven uncovered for about 20 minutes until the edges are bubbling and the top is golden and a little bit crispy. You'll smell it before it's done, and that's your signal to check on it.
Rest and finish:
Pull it out and let it sit for five minutes so it sets just enough to serve cleanly, then scatter fresh basil or parsley over the top if you have it. This resting time matters more than people think because the bake firms up and actually holds together when you serve it.
Hearty pizza pasta bake featuring melty mozzarella, savory pepperoni, and protein-rich Greek yogurt sauce, served fresh from the oven.  Save to Pinterest
Hearty pizza pasta bake featuring melty mozzarella, savory pepperoni, and protein-rich Greek yogurt sauce, served fresh from the oven. | citrushearth.com

This dish became something more than just dinner one night when my sister brought her boyfriend over and he went back for seconds without asking if it was okay first, which apparently is his way of saying something is genuinely good. That moment mattered more than the recipe itself, because it proved that eating for your goals doesn't mean eating sad food at the corner of your plate while everyone else enjoys something better.

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Why Greek Yogurt Changes Everything

Using Greek yogurt in a baked pasta was weird to me at first, but the moment I understood that it's basically just strained, concentrated cream, everything clicked. It brings tang that balances the sweetness of marinara, it adds protein without dairy heaviness, and it keeps the sauce creamy in the oven while regular cream would split and separate. The texture difference is subtle but real, and once you taste it, you start wondering why every carbonara recipe doesn't use this trick.

Making It Your Own

The beauty of this bake is that you can honestly throw whatever vegetables you have into that skillet and it'll work, which means you're never actually stuck making the exact same dish twice. I've added fresh spinach in the last minute (it wilts right in the heat), swapped mushrooms for zucchini, and even thrown in some olives when I was feeling fancy. The structure stays solid because the pasta, protein, and yogurt sauce are doing the heavy lifting, so everything else is just flavor and texture customization.

  • Swap ground turkey or chicken for the beef if you want even leaner protein, and the final bake tastes just as satisfying.
  • Use whole wheat or chickpea pasta to add fiber and extra grams of protein without changing the cooking method.
  • Add a handful of fresh spinach or diced zucchini right into the skillet at the end to boost vegetables without extra prep steps.

Pairing and Serving Ideas

This bake is hearty enough to stand alone, but I've learned that serving it with something fresh on the side makes the whole meal feel more balanced and interesting. A simple green salad with lemon vinaigrette cuts through the richness perfectly, and if you're drinking wine, a dry Italian red like a Chianti or Sangiovese pairs beautifully because the acidity matches the marinara and the tannins stand up to the pepperoni and cheese.

Baked pizza pasta casserole loaded with ground beef, bell peppers, mushrooms, and a high-protein cheese sauce, topped with extra pepperoni. Save to Pinterest
Baked pizza pasta casserole loaded with ground beef, bell peppers, mushrooms, and a high-protein cheese sauce, topped with extra pepperoni. | citrushearth.com

This recipe became my proof that eating for performance and eating for pleasure aren't actually different things when you know how to build a dish. It sits on your table looking like indulgence, tastes like celebration, and makes your body feel strong afterward, which is honestly the whole point of cooking at all.

Recipe FAQs

What pasta works best for this bake?

High-protein penne or rotini are ideal as they hold sauce well and provide added nutritional benefit.

Can I substitute the beef with other meats?

Yes, ground turkey or chicken can be used as lean alternatives without compromising flavor.

How do I achieve a creamy sauce without heaviness?

Using low-fat Greek yogurt blended with mozzarella and Parmesan creates a smooth, creamy sauce without excess richness.

Are additional vegetables recommended?

Adding bell peppers, mushrooms, spinach, or zucchini enhances flavor and adds nutritional variety.

What is the best way to garnish this dish?

Fresh basil or parsley sprinkled on top after baking adds a bright, fresh finish.

How long should I bake the dish?

Bake uncovered at 375°F (190°C) for about 20 minutes until the top is golden and bubbling.

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High-Protein Pizza Pasta Bake

A wholesome pasta dish featuring lean beef, pepperoni, and a creamy cheese sauce baked golden and bubbly.

Prep duration
20 minutes
Time to cook
30 minutes
Overall time
50 minutes
Created by Elise Porter


Skill level Easy

Cuisine Type American-Italian

Makes 6 Number of servings

Dietary details None specified

What Goes In

Pasta

01 12 oz high-protein penne or rotini pasta

Meats

01 8 oz lean ground beef
02 2 oz turkey or regular pepperoni, sliced

Vegetables & Aromatics

01 1 medium onion, finely chopped
02 2 cloves garlic, minced
03 1 bell pepper, diced
04 1 cup sliced mushrooms

Sauce

01 2 cups low-sodium marinara sauce
02 1 cup plain Greek yogurt (2% or fat-free)
03 1 cup part-skim shredded mozzarella cheese
04 ¼ cup grated Parmesan cheese
05 ½ tsp dried oregano
06 ½ tsp dried basil
07 ¼ tsp crushed red pepper flakes
08 Salt and black pepper to taste

Topping

01 ½ cup part-skim shredded mozzarella cheese
02 1 oz pepperoni, sliced for topping
03 Fresh basil or parsley, chopped

How to Make It

Step 01

Prepare Baking Dish: Preheat oven to 375°F. Grease a 9x13-inch baking dish and set aside.

Step 02

Cook Pasta: Cook pasta in a large pot of salted boiling water until al dente. Drain and set aside.

Step 03

Brown Meat and Vegetables: In a large skillet over medium heat, cook ground beef until browned, breaking it apart as it cooks. Add onion and cook 3-4 minutes until softened. Stir in garlic, bell pepper, and mushrooms; sauté for 3 minutes. Drain excess fat if needed.

Step 04

Build Beef Sauce: Stir in marinara sauce, oregano, basil, and red pepper flakes. Simmer for 5 minutes. Season with salt and pepper to taste.

Step 05

Prepare Yogurt-Cheese Mixture: In a bowl, whisk together Greek yogurt, 1 cup mozzarella, and Parmesan until smooth and well combined.

Step 06

Combine All Components: In a large mixing bowl, combine cooked pasta, beef-vegetable sauce, sliced pepperoni, and yogurt-cheese mixture. Toss thoroughly to coat all pasta evenly.

Step 07

Assemble Bake: Transfer mixture to prepared baking dish. Top with remaining ½ cup mozzarella and extra pepperoni slices.

Step 08

Bake: Bake uncovered for 20 minutes until bubbly and golden brown.

Step 09

Rest and Serve: Remove from oven and let rest for 5 minutes. Garnish with fresh basil or parsley. Serve warm.

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What You’ll Need

  • Large pot
  • Large skillet
  • Mixing bowls
  • 9x13-inch baking dish
  • Whisk
  • Spatula

Allergy details

Double-check ingredients for allergens; talk with your doctor if you’re uncertain.
  • Contains wheat from pasta
  • Contains milk from cheese and yogurt
  • Contains possible sulfites from pepperoni

Nutrition info (for each serving)

Nutrition data is for reference and isn’t meant as health advice.
  • Calorie count: 410
  • Fat content: 13 grams
  • Carbohydrates: 40 grams
  • Protein amount: 31 grams

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